Job Location : Cambridge,MA, USA
Job Description
PT work:
**Desired Start Date: 6/30/2025End Date: 12/31/2025 **
Hrs/Wk:20.00 (negotiable)
Work enviroment: Hybrid at Cambridge, MA
POSITION SUMMARY:• The project focuses on the assay development of next-generation sequencing (NGS)-based viral detection.• The role will transform existing bash and Python analysis programs into efficient Nextflow workflows.• The successful candidate will have a proven track record in bioinformatics and Nextflow workflow development utilizing high-throughput sequencing data.• They are expected to be detail-oriented, capable of working independently, and able to collaborate with project management and collaborators.• Maintain detailed documentation of workflow processes and provide regular updates on project progress.
POSITION RESPONSIBILITIES:• Develop and implement Nextflow workflows based on an existing analysis workflow to streamline our NGS-based viral detection processes.• Translate existing analysis programs, initially developed in bash and python, into modular Nextflow workflows.• Provide insights and recommendations for improvements in workflow design and tool utilization.• Demonstrate strong understanding of bioinformatics tools and their application to NGS data analysis.• Utilize tools, such as BLAST, STAR, Bowtie, samtools, and Python-based packages to optimize workflow performance and accuracy in the viral detection assay.• Maintain comprehensive documentation of workflows on GitHub for reproducibility.• Regular report on progress, challenges, and outcome to project management and collaborators.
ORGANIZATIONAL RELATIONSHIPS:• Machine Learning and Computational Sciences (MLCS) group at Company• Biotherapeutic Pharmaceutical Sciences (BTx Pharm Sci) group at Company
EDUCATION AND EXPERIENCE:• Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field.• A Master's degree or Ph.D. in a relevant discipline is preferred.• Hands-on experience in bioinformatics workflow development, particularly with Nextflow, is required.• Proven experience in programming using bash and Python in the context of NGS data analysis.• Experience with version control system, particularly GitHub, for documentation and collaboration purposes.
TECHNICAL SKILLS REQUIREMENTS:• Proficiency in developing bioinformatics workflow using Nextflow, with a strong understanding of its syntax, modules, processes, and configurations.• Strong programming skills in Python.• In-depth knowledge of bioinformatics tools commonly used in NGS data analysis, including BLAST, STAR, Bowtie, samtools, etc.• Familiarity with high-performance computing environments (HPC) or cloud-based platforms.• Proficiency in using version control systems such as Git for code management and collaboration.
Hard Skills:1. Nextflow/Workflow scripting skills2. Bioinformatics skill set3. Python
Soft skills:1. Communication (written/verbal)
Interview Process:Teams Bridge with HMVirtual/In-person (Panel)IT Technical not Clinical / Scientific20/hrs per wk (negotiable)
Company Description
www.techdataservice.com
Company Descriptionwww.techdataservice.com
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